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Biol 260T - Biogeochemisrty

Fall 2000

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Syllabus

1. Course Details

BIOL 260T
3 Units
Tuesdays and Thursday 5:00-6:15 p.m.; S300
Prerequisites: Permission of Instructor (and willingness to read a lot and participate actively in discussions!)

 This is graduate level course for students in the biological and geological sciences.  A comprehensive background in basic biology and chemistry as well as ecology, geology, and microbiology is necessary.  If concepts discussed in class or in the reading are not clear to you or are new to you, please let the instructors know and we will provide additional reading material for you.

2. Instructors

Dr. Ruth Ann Kern
Science 316A
278-4075
rakern@csufresno.edu
Office Hours Tuesday 2:00 – 4:00 p.m.or by appointment

 

Dr. Alice Wright 
            Science 10B
            278-7692
            awright@csufresno.edu
            Office Hours Tuesday and Wednesday 2:00-3:30 p.m.

 

3. Course Description

Biogeochemistry is the science of the chemical and biological interactions between the biotic and abiotic realms.  Beginning with the geological origins of Earth and the ensuing composition of our atmosphere, lithosphere, and biosphere, we will study, in some detail, the biogeochemistry of terrestrial and aquatic ecosystems.  We will finish the semester with an overview of the major global biogeochemical cycles and their inter-relationships.

Each subject area will be presented in a series of lectures supported by assigned reading in the textbook and followed by a class discussion of current literature relevant to the subject.  Readings for the discussions will be assigned by the instructor and announced one week before each discussion.  Discussions will be led by teams of students.  You will not be graded on leading the discussion, but your participation in the discussions overall will constitute 25% of your grade.  Therefore, be sure to read the articles in advance and come to class prepared for the discussion.

There will be three equal exams throughout the semester.  They will cover material presented since the last semester and will be comprehensive of lecture, reading, and discussion.

4. Readings

Required and available at the bookstore:

Schlesinger, W.H. 1997. Biogeochemistry: an analysis of global change, 2nd ed. Academic Press, San Diego, CA. USA.

We will be assigning additional readings as we go along. These will be announced during class for the following week’s discussion.

5. Grades

This is a graduate level course and we expect all participants to do top-level work.  However, for the record:

100 – 90% = A, 89 - 80% = B, 79 – 70 % = C, 69 – 60 % = D, less than 60% = F. 

Point Breakdown:   Exam #1 = 100 points
Exam #2 = 100 points
Exam #3 = 100 points
Discussion Participation = 100 points

 All parts of the class are weighted equally, however, you MUST complete all 4 parts to pass the class (i.e. anyone who doesn’t participate in discussion or doesn’t take one of the exams will fail, despite the total number of points accrued).

6. Students with Disabilities

It is our intention to make this class accessible to all students.  If you believe that you have special needs that I should be aware of to make any components of this class more accessible to you, please see me as soon as possible.  While the University doesn’t have an officially published policy (yet) on participation in this class by students with disabilities, the following has been approved by Dr. Tom Ebert, Associate Vice President for Academic Affairs:

"The Department of Biology cooperates with the office of Services for Students with Disabilities (SSD) to make reasonable accommodations for qualified students with disabilities (cf. Americans with Disabilities Act and Section 504, Rehabilitation Act).  If you have not registered with Services for Students with Disabilities, we encourage you to do so.  AFTER MEETING WITH THE SSD COUNSELOR, present your written Accommodation Request to your instructor as soon as possible.  If you experience any problems in getting reasonable accommodations, please contact the Biology Department Chair or SERVICES FOR STUDENTS WITH DISABILITIES (278-2811).

7.  Other University Policies

  1. The Department complies with the University's policies concerning discrimination and sexual harassment.  They will not be tolerated in this class or anywhere in the University.  If you have any complaints, please contact the Department Chair.

  2. Cheating and plagiarism are considered extremely bad form and can lead to failure and expulsion from the University.  See the University policy regarding student misconduct in the University Catalog and Schedule of Courses.

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Schedule

Week

Date

Topic

Reading

Lecturer

1

8/29

Intro

Ch.1

Kern

 

8/31

Finish Ch. 1, Discuss Paper

 

Kern

2

9/5

Origins

Ch.2 – 1st half

Kern 

 

9/7

Origins – Evolution of Metabolic Pathways

Ch. 2 – 2nd half

Wright

3

9/12

Paper Discussion

 

Wright

 

9/14

Atmosphere

Ch.3

Kern 

4

9/19

Atmosphere

Ch.3

Kern 

 

9/21

Paper Discussion 

 

Kern

5

9/26

Lithosphere (John Suen)

Ch.4

Kern

 

9/28

Lithosphere (John Suen)

Ch.4

Kern

6

10/3

Exam #1

Ch. 1-4 and papers discussed

Exam

 

10/5

Terrestrial Systems

Ch.5

Kern 

7

10/10

Terrestrial Carbon Cycle

Ch.5

Kern 

 

10/12

Biogeochemical Cycling on Land

Ch. 6

Kern 

8

10/17

Models of Terrestrial Nutrient Cycling

Ch. 6

Kern 

 

10/19

Paper Discussion 

 

Kern 

9

10/24

Microbial Biomass & Processes in Soils, Redox

Ch. 6 & 7

Harding

 

10/26

Redox redux, BGC wetlands and lakes

Ch. 7

Harding

10

10/31

Paper Discussion

 

Harding 

 

11/2

Rivers and Estuaries

Ch. 8

Kern 

11

11/7

Oceans – part I

Ch. 9 – 1st half

Kern 

 

11/9

Oceans – part II

Ch. 9 – 2nd half

Wright

12

11/14

Paper Discussion

 

Kern 

 

11/16

Exam #2

Ch. 5-9 and papers discussed

Exam

13

11/21

Global Cycles - Water

Chapter 10

Wright

 

11/23

No Class – Thanksgiving

 

Holiday

14

11/28

Global Cycles - Carbon 

Chapter 11

Wright

 

11/30

Global Cycles – Nitrogen 

Chapter 12

Wright

15

12/5

Global Cycles –paper discussion

 

Wright

 

12/7

Global Cycles – Phosphorus

Chapter 13

Wright

16

12/12

Global Cycles – Sulfur & Paper Discussion

Chapter 14

Wright

17

12/19

Final Exam – 5:45-7:45 p.m.

 

Exam

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